Mortis Engine lets you play units from other player's discard piles as if they had necromancy and were in yours. But, here's where it gets tricky.
My assumption is, Necromancy works normally, the end of the turn hits, and the unit goes back to the bottom of it's owner's deck.
But, the phrasing is a little odd. Countess Isera actually adds necromancy to the units she revives, so the text is still on the unit at the end of the turn when it travels to your deck. But, with Mortis Engine the keyword is never actually added. Reasonably this should send the card packing, but I could see an argument that because it didn't have the keyword, it should remain in play.
The other thing is, the necromancy reminder text actually specifies that the card goes to the bottom of your deck. I'm pretty sure this is supposed to go to the bottom of the owner's deck, (because shuffling another player's cards into your deck would be a nightmare) but I can't find my copy of the MotD rule insert.