Rogue Traders by their mandate handed down from the Emperor are exempt from all of that. Full stop. (outside Imperial space anyhow)
As I said before the Marine may not like it, but frankly, outside the borders of the Imperium he really doesn't get a vote. Also any chapter that has ties to a RT Dynasty is going to get that.
As long as the RT isn't doing anything that directly hurts The Imperium he likely won't get shot in the face by the Marine.