Let's say that during the next gaming session, they kill lord captain Roth and board the ship.
Kill or convert everyone onboard and manage to reset the systems +/- as they would've been redirected by Roth to do it.
Well, in theory the ship now works by its minimum functionalities. And after some months or a year of dry dock it should be 100% again.
But holleh shitteh, that's a Battleship, one of the largest in the imperial fleet.
What would you do as GM in this case? Give them their prize? Or act really Deus Ex Machina on this one and disallow them to have such a ship?
Can the Imperial Navy actually demmand they return such a potent vessel back to them?