so uh…how do I organize teh cards in the box, there are 6 slots that I have no clue what to do with them

Those slots are usefull for the small decks of small cards. When I only had the base game I placed Purchase cards in one, Talisman cards in one, Alignment cards in one and Spell cards in the remaining three. The space beneath all of these slots are used for the Strength, Craft, Life and Gold counters. I have seperated the large counters into one of the slots and put the dice in the companioned one. This is of course up to taste and I have switched around the components after time, I will have to rearrange for the City expansion soon.