I'm really surprised that hasn't come up already, but I was wondering if any GMs decide to reconcile encounters via games of classic 40k, if the circumstances are appropriate. I'm thinking, let's say the Deathwatch team comes across a PDF regiment or something, and they have tot fight off some Orks or Tyranids, for example, would it be too out of line to give your players 'command' of that army and then just play some good old fashioned 40k to resolve the encounter? Obviously the Deathwatch team on the tabletop would be legendary 'hero'-level characters, and if they were to perish in battle they could still burn fate to survive as per normal. The GM would control the opposing force, and the game would be more 'narrative' than usual (the GM would not be playing to win, there should be some task to achieve in the battle that the opposing force would get in the way of), but I think it'd still be a fun shakeup for the small squad to suddenly control a large army.
Same argument for Epic-scale or Battlefleet Gothic.
Thoughts?