The war between Law and Chaos is a mainstay of fantasy literature. Usually humans are caught in between and have to somehow navigate the balance. This is seen in the works of Michael Moorcock and in even in science fiction (Babylon 5 had these elements big time). Warhammer 40k is odd in that it is one of the few settings with Forces of Chaos, but no counterbalancing (and usually equally malignant) Forces of Law.
What if the above isn't true. It's implied heartily that The Golden Throne does something a lot more than just keep The Emperor in near-death and serve as a beacon for warp travel. 20,000 psykers a day are sacrificed to it. The discussions about it look like some sort of massive magical ritual that has been ongoing for centuries.
Meanwhile, if there's one word to describe The Imperium, that word is control. Technology has stagnated, The Ecclesiarchy has its boot on everyone's neck, free thought is absolutely put down. A goal of The Imperium would be a static universe, with only humans in it, and those humans would be kept at the same technology level, and firmly within control of a centralized authority forever.
I wonder if this isn't the great ideological red-herring of Warhammer 40k. Perhaps there ARE the forces of Law and perhaps they ARE every bit as malignant as The Forces of Chaos. What if The Emperor is working to become a Lord of Law (as opposed to a Lord of Chaos)? He's getting these energies fed to him at massive rates from everywhere in The Galaxy, what if he's using them to transform himself, slowly, into an actual God?
In this way, there could be a Law/Chaos balance in Warhammer 40k. It also to some degree explains why Chaos doesn't really have a lot of sway amongst the other alien races. If you see Chaos as what pops out when beings try to obtain control (A sort of 'algebra' where as soon as your empire tries to do '+1' a '-1' of chaos somewhere appears), then it makes sense that Orks or Slaugth don't seem to have much problem with Chaos. Orks want to fight, Slaugth want to feed, neither really sees control as an ends, and both only use control to a limited agree to achieve other ends. Both also are perfectly ok with things going haywire so long as they benefit from the disorder.
The Eldar used to try to have control, but that went poorly, and they ended up creating a Chaos lord from it.
Could it be then, that the Emperor is 'creating' Chaos, in his effort to become Law? This could lead to all sorts of interesting plot elements because The Eldar would have figured something like this out.
What if Warhammer 40k is simply Law vs Chaos, but from Law's point of view?