So, a bit of background to the post. My group have found a wrecked ship belonging to another rogue trader and are exploring it. Due to the nature of the wreck (the full story's not important, but I can reveal it for those who are curious), the ship's now overrun with warp beasts and Orks. In addition to this, there's a mysterious entity that has access to the ship's public vox-systems and has been driving any crew who'll listen insane with his revelations. The remaining crew are fairly certain that it's a daemon more powerful than the ones they've faced so far, and the party seem to be going along with that assumption.
So, how about this: This entity is the ship's Machine Spirit? It knows that the crew are planning to scrap/destroy it as soon as they can, and it doesn't really want this. So it's actively trying to stop them, while also helping the party explore and survive in order to build up their gratitude, so it can ask for a skeleton staff from their crew, one who'll work to repair the ship and keep it running.
I really like the twist, but what do you guys think?