This is probably a silly question, but...
Q: If a ship wants to spend a command dial and token of the same type, does it have to spend them simultaneously?
A: Yes. It must already have both the dial and token, and must spend them together. For example, when a ship with both a [concentrate fire] dial and a [concentrate fire] token decides to resolve that command, it must decide whether it is spending the dial, the token, or both before resolving that command’s effects.
Fleet commands allow you to spend a token to get the card effect, but this doesn't prevent you from resolving a dial of the same type later, correct? Because spending a CF token for IF! isn't resolving a CF command, and spending a squad token for AFFM! isn't resolving a squad command.