So previously in 1.0 I know they ruled that is you had a ship with cloaking device continued to work after the Swap. Essentially leaving you cloaked until you decloaked.

Does this work the same in 2.0? Has this been clarified somewhere?

Thanks,

Yes it still works. The check for Cloaking Device happens at the start of the Planning Phase, Cik's swap happens in the End Phase so he would have swapped the upgrade to a different ship the turn before. Since Cloaking Device is then no longer assigned to the cloaked ship the check doesn't happen for that ship, but will for the ship Cloaking Device was swapped to if they're cloaked.

And no it isn't clarified anywhere. It doesn't need to be. The cards are clear.