Does it triggers?

If you have not already done a bonus attack this round, and you use Electronic Baffle to take a damage to remove a red token whilst QD has at least one shield left, this triggers QD's ability, yes.

arguably way stronger on QD than in 1.0 since this happens at the end of the turn now instead of upon red token received and locks are red tokens.
So if you lock QD, even with a friendly ship, you can baffle it if it doesnt trigger normally. Juicy.