Search effects
Whenever a player searches through a deck, that player shuffles the deck after searching it unless a card effect says otherwise. Players do not shuffle or change the order of a discard pile after searching it.
That's in the game's official rule clarifications.
When I play a card like The Eagles Are Coming! I shuffle the player's deck after searching the top 5 cards for any number of Eagle cards (the card then only indicates to shuffle the other cards back...).
Some cards say "shuffle back into" like Eastern Crows or core Beorn , in these cases I don't shuffle the deck, I just put the card back somewhere.
It's evident that , when you "shuffle back into" without shuffling all the deck , that you know approximately where the card will be, and in some cases exactly where it is (for example if you shuffle back and there're 3 cards left in the deck).
It's really thin border between shuffle back into the deck and put the card where you want....
When I "shuffle back into" I always put the card somewhere in the middle of the deck ,but I'm tempted to put Beorn near the top and the crows near the bottom of their decks (if Thalin is not with me...), ahah! What about you?