Mutant Soundmixer is a useful free software that have been made for the swedish RPG Mutant U:A.
It have been translated to english and have a lot of sounds that you can loop for creating atmosphere in your adventures.
I haven't started with Rogue Trader yet so I haven't tested it for my RG-campaign but it have worked for all other RPG's I play (from wiking fantasy to horror in 2008 New York-setting).
You download the program free on this site: http://www.stefanisberg.com/mutant/Mixer_eng.html
With the possibility to use your own sounds and music (recorded or downloaded from internet) with the program this is really good to create mood.