I was thinking of getting 2 base sets, and the command and hero blisters. I'm hoping that the spearmen and knights blisters won't be bundled with cards and/or upgrades that I might want. Do they do this for X Wing? (e.g., the X Wing fighter blister comes with cards and upgrades that is not included in the base set that also comes with an X Wing)
It is highly probable that the Knight blisters and Spearmen blisters will come with different cards than in the core set. They certainly do in X-Wing and Armada, and I expect they do in Imperial Assault (don't know for sure as I have never played it). I would suggest that you might want to get one core and some troop blisters instead of two cores. However, these are still models in the same faction so I wouldn't class this as being abusive. We do not know for certain though.
I would second this. I bought two cores of Armada, and regretted it, better to get one or more of each of the expansions if they come with unique stuff.