To expand on my thought: Alter the game however you like for whatever reason. Play 600 point games. Ignore objectives. Ignore the fighter restriction. BUT if you plan to play in tournaments, know the "right way".
I have a great example. I HATE putting tokens on the table/ship bases. But the rule says they should be in the play area by the ships. I prefer to keep them on the card, and that is what I do at home. However, on more than one occasion my opponent has asked me to put them on the table, and I have been happy to oblige. That is his right as it's the actual rule!