So I don't believe you need to PHYSICALLY have your ships plugged into the bottom of the Gozanti in order for them to be "docked". It seems like it's more for thematics, as well as a way to count how many are docked, and how many are deployed.
I was considering NOT having my ships docked underneath but rather simply having them built already and off to the side, ready to go in. Otherwise I'm going to have to pick up my model, pull out the TIE, put my model back on the board, get my TIE affixed to the base, and then deploy it. Plenty of chance to mis-place the Gozanti while doing all of that and it would just be "cleaner" to have your ships built-up already and ready to deploy.
EDIT - Especially considering that if you are docking Bombers... you cannot possibly have them docked into the Gozanti as they don't fit.
Edited by Crabbok