I played with this today (Vic2, Screed, ICBs, H9, Warlord) and so far, I've not seen the point of it.
Losing 1 command token doesn't sound too painful, plus if he doesn't have a token, all I can damage is a shield... if he has no shields, well, no damage. Sure, 1 shield damage is better than none but more often than not, I've done enough damage to get into his hull so a faceup damage card sounds so much better rather than being able to do 1 shield damage.
I think today I might as well have left it out and had a 5-point bid for initiative.