So Star Wars Armada is not even out and there are at least 3 other threads talking about reskinning the game with other Sci Fi universes. This amuses me a little
I guess its true what they say: imitation is the greatest form of flattery.
I'm not begrudging anyone having/wanting games set in those universes, but I think its better to give each one its own set of rules designed for their ships. For instance, I love BSG but it lacks the variety of ships to allow for different fleet builds etc. In Star Trek I don't ever recall seeing squadrons of fighters (most battles just seemed to be two ships slugging it out).
I think the best license for an Armada style game would be Babylon 5 (I am a huge fan) but I wouldn't want a carbon copy of Armada. Heck, whilst we're on the subject, Firefly could also be a another good one (set pre-series during the civil war).
From what I've read of Armada (basically every article released, several times), the rules and models bring the feel of SW battles to the game. I don't think that will necessarily be true for other universes if it was simply reskinned - each one deserves the full design treatment, lets just hope that one day they do.