Don't forget that it hugely depends on who the Rogue Trader is fighting as well.
Arriving on a feral or fuedal world and the armsmen would effectively be very well armed troops and even general ratings could be useful if push came to shove.
On a world with a higher tech level and untrained soliders are likely to be as much of a liability as anything else.
Personally I would be wary of allowing the Rogue Trader too many elite/well trained troops unless they have invested heavily in terms of Profit Factor/Requisition into them. Afterall you want the Rogue Trader and his officers to be doing most of the leg work.
I would say as standard there should be 0.1% of the crew should be good well trained oathsworn and then maybe 1% who are soldiers. Then a further 10% who are armsmen. Able to hold thier own against inferior troops and probably able to use various weapons but closer to police/militia than soldiers and would probably have other functions on the ship as well..
On a Cruiser sized ship this would give you (pop: 90,000 aprox) this would give you
90 Elite soldiers
900 Soldiers
9000 armsmen