Do you like all your ships to be able to operate as autonomous, manouverable combat vessels? Go Firespray. Do you want a strong support vessel, that can be configured in a multitude of ways (and price ranges)? Go shuttle.
Basically, the shuttle is good as a support vessel, meaning that it works best when there is something around it which it can support (and get support from). Conversely, it is not as good a game finisher all on its own as the Firespray.