Just something that popped into my head, it's not fully formed, nor balanced, nor sane, nor fair, but some people may not mind that so I figured I'd put it up and see what people thought.
When spending a fate point the character in question rolls against their corruption. As fate points are the Emperor deciding to intervene in a minor way then it would be safe to assume he feels like helping uncorrupted souls. If they roll under their corruption the fate point is spent but the effect doesn't trigger.
When spending fate points to activate a faith power the character being affected must make a roll against their corruption as well, Rolling under gives no effect as the corruption of their soul refuses to accept this minor divine act.
This was to make Corruption more damaging to characters instead of just occasionally giving maladies and mutations showing that their soul is turning from the Emperor.
Thoughts, opinions?