Looking at the answers Sam has given to clarify hard point usage when using Upgraded Weapons, it makes me wonder why anyone would replace weapons if double/tripke/quadruple mounts are desired.
For example, my group wants to mount heavy laser cannons on their E-9 Explorer. They want them in dorsal and ventral turret mounts, and they want double (or maybe triple) cannons in each mount. These could replace the medium laser cannons (which makes aesthetic sense) or be additional turrets. No matter what, these will take up 2 hard points, so why wouldn't I just leave the medium lasers in place too?
I have considered replacing the medium lasers with light ion cannons (or concussion missile launchers), using just one weapon to replace each double mount so as to not use additional hard points. This would be in addition to adding the heavy laser turrets.
Still, it seems odd that you always get charged hard points for adding weapons with Linked even when replacing weapons with Linked. In general, you're almost always better off just slapping more weapons on rather than replacing existing mounts.