So I've been trying to find a good way to store all my cards. The pilot cards are easily stored in a deckbox, but I was wondering where to store the mini ones (sleeved) and then I saw this at my FLGS.
http://www.ultrapro.com/product_info.php?products_id=1740
It's a side-load horizontal deck box, which will fit the upgrade/damage cards perfectly upright, like a normal deckbox.
Here is mine with all my cards in (they're loose, because of new sleeve, but can easily fit another 1/3 of what I have, which is one of everything except the huge ships and bomber and lambda)